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GENE INFORMATION
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The gene information section lists the gene name (HUGO Gene Nomenclature Committee ( HGNC) name if available), any approved gene synonyms, Ensembl gene description, and the Entrez gene summary from the National Center for Biotechnology Information.
The chromosomal and cytoband location of the gene according to Ensembl is reported together with the Ensembl gene identifier and Ensembl database version. The Entrez gene identifier for the gene is also given. If any of the protein products of the gene is linked to a UniProt KB/SWISS-PROT entry, links to the UniProt and the neXtProt databases for these proteins are displayed.
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Gene name |
CYP1A1 (HGNC Symbol) |
Synonyms |
CP11, CYP1, P1-450, P450-C, P450DX |
Description |
Cytochrome P450, family 1, subfamily A, polypeptide 1 (HGNC Symbol) |
Entrez gene summary |
This gene, CYP1A1, encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum and its expression is induced by some polycyclic aromatic hydrocarbons (PAHs), some of which are found in cigarette smoke. The enzyme's endogenous substrate is unknown; however, it is able to metabolize some PAHs to carcinogenic intermediates. The gene has been associated with lung cancer risk. A related family member, CYP1A2, is located approximately 25 kb away from CYP1A1 on chromosome 15. [provided by RefSeq, Jul 2008] |
Chromosome |
15 |
Cytoband |
q24.1 |
Chromosome location (bp) |
75011883 - 75017951 |
Protein evidence |
Evidence at protein level (all genes) |
Ensembl |
ENSG00000140465 (version 75.37) |
Entrez gene |
1543 |
UniProt |
P04798 (UniProt - Evidence at protein level) |
neXtProt |
NX_P04798 |
Antibodypedia |
CYP1A1 antibodies |
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PROTEIN VIEW
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The protein view displays protein features. The tabs at the top of the protein view section can be used to switch between the different splice variants encoded by this gene. The mouse over function displays additional data for the features in the protein view.
At the top of the protein view, the maximum percent sequence identity of the protein to all other proteins from other human genes is shown, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50) ( read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0 and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green.
Common (purple) and unique (grey) regions between alternative processed transcripts from the same gene are also displayed ( read more), and at the bottom of the protein view is the protein scale.
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PROTEIN INFORMATION
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The protein information section displays the alternative protein-coding transcripts (splice variants) encoded by this gene, according to the Ensembl database.
The ENSP identifier links to the Ensembl website for that protein, and the ENST identifier links to the Ensembl website for that transcript. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes to which this protein has been assigned are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column.
The length of the protein (amino acid residues) (according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0 and Phobius and predicted transmembrane region(s) (according to MDM) are also reported.
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Splice variant |
Ensembl |
UniProt |
Protein class |
Gene ontology |
Length (aa) |
Molecular mass (kDa) |
Signal peptide (predicted) |
Transmembrane regions (predicted)
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CYP1A1-001 |
ENSP00000369050
ENST00000379727
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P04798 Show all »
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P04798 [Direct mapping]Cytochrome P450 1A1 A0N0X8 [Target identity:100%; Query identity:100%]Cytochrome P450, family 1, subfamily A, polypeptide 1; Cytochrome P450, family 1, subfamily A, polypeptide 1, isoform CRA_a; cDNA, FLJ94514, Homo sapiens cytochrome P450, family 1, subfamily A, polypeptide 1(CYP1A1), mRNA A4F4K4 [Target identity:49%; Query identity:100%]Cytochrome P450 1A1 A4F3V8 [Target identity:34%; Query identity:100%]Cytochrome P450 1A1
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Oxidoreductases MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins Enzymes ENZYME proteins Phobius predicted secreted proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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512 |
58.2 |
No |
0 |
CYP1A1-002 |
ENSP00000456585
ENST00000567032
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P04798 Show all »
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P04798 [Direct mapping]Cytochrome P450 1A1 A0N0X8 [Target identity:100%; Query identity:100%]Cytochrome P450, family 1, subfamily A, polypeptide 1; Cytochrome P450, family 1, subfamily A, polypeptide 1, isoform CRA_a; cDNA, FLJ94514, Homo sapiens cytochrome P450, family 1, subfamily A, polypeptide 1(CYP1A1), mRNA A4F4K4 [Target identity:49%; Query identity:100%]Cytochrome P450 1A1 A4F3V8 [Target identity:34%; Query identity:100%]Cytochrome P450 1A1
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Oxidoreductases MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins Enzymes ENZYME proteins Phobius predicted secreted proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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512 |
58.2 |
No |
0 |
CYP1A1-003 |
ENSP00000378489
ENST00000395049
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E7EMT5 Show all »
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E7EMT5 [Target identity:100%; Query identity:100%]Cytochrome P450 1A1
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Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins 1TM proteins predicted by MDM Predicted membrane proteins Prediction method-based # TM segments-based Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0005506 [iron ion binding] GO:0016705 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen] GO:0016712 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen] GO:0020037 [heme binding] GO:0055114 [oxidation-reduction process]
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483 |
54.8 |
No |
1 |
CYP1A1-004 |
ENSP00000457668
ENST00000564596
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P04798 Show all »
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P04798 [Direct mapping]Cytochrome P450 1A1
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Oxidoreductases Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins 1TM proteins predicted by MDM Enzymes ENZYME proteins Predicted membrane proteins Prediction method-based # TM segments-based Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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157 |
18.4 |
No |
1 |
CYP1A1-005 |
ENSP00000455051
ENST00000569630
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MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins Phobius predicted secreted proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0005506 [iron ion binding] GO:0016705 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen] GO:0020037 [heme binding] GO:0055114 [oxidation-reduction process]
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189 |
20.8 |
No |
0 |
CYP1A1-006 |
ENSP00000455846
ENST00000566503
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A4F3V8 Show all »
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A4F3V8 [Target identity:100%; Query identity:100%]Cytochrome P450 1A1
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MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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175 |
20.6 |
No |
0 |
CYP1A1-007 |
ENSP00000455340
ENST00000562201
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P04798 Show all »
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P04798 [Direct mapping]Cytochrome P450 1A1
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Oxidoreductases MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins Enzymes ENZYME proteins Phobius predicted secreted proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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189 |
20.8 |
No |
0 |
CYP1A1-201 |
ENSP00000378488
ENST00000395048
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P04798 Show all »
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P04798 [Direct mapping]Cytochrome P450 1A1 A0N0X8 [Target identity:100%; Query identity:100%]Cytochrome P450, family 1, subfamily A, polypeptide 1; Cytochrome P450, family 1, subfamily A, polypeptide 1, isoform CRA_a; cDNA, FLJ94514, Homo sapiens cytochrome P450, family 1, subfamily A, polypeptide 1(CYP1A1), mRNA A4F4K4 [Target identity:49%; Query identity:100%]Cytochrome P450 1A1 A4F3V8 [Target identity:34%; Query identity:100%]Cytochrome P450 1A1
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Oxidoreductases MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins Enzymes ENZYME proteins Phobius predicted secreted proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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512 |
58.2 |
No |
0 |
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