Citing the Human Protein Atlas

To cite us, please use:

The Human Protein Atlas

UhlÚn M, Fagerberg L, Hallstr÷m BM, Lindskog C, Oksvold P, Mardinoglu A, Sivertsson ┼, Kampf C, Sj÷stedt E, Asplund A, Olsson I, Edlund K, Lundberg E, Navani S, Szigyarto CA, Odeberg J, Djureinovic D, Takanen JO, Hober S, Alm T, Edqvist PH, Berling H, Tegel H, Mulder J, Rockberg J, Nilsson P, Schwenk JM, Hamsten M, von Feilitzen K, Forsberg M, Persson L, Johansson F, Zwahlen M, von Heijne G, Nielsen J, PontÚn F
Tissue-based map of the human proteome
Science 2015
DOI: 10.1126/science.1260419

Uhlen M, Oksvold P, Fagerberg L, Lundberg E, Jonasson K, Forsberg M, Zwahlen M, Kampf C, Wester K, Hober S, Wernerus H, Bj÷rling L, Ponten F.
Towards a knowledge-based Human Protein Atlas.
Nat Biotechnol. 2010 28(12):1248-50.
PubMed: 21139605 DOI: 10.1038/nbt1210-1248

The original Human Protein Atlas publication

UhlÚn M, Bj÷rling E, Agaton C, Szigyarto CA, Amini B, Andersen E, Andersson AC, Angelidou P, Asplund A, Asplund C, Berglund L, Bergstr÷m K, Brumer H, Cerjan D, Ekstr÷m M, Elobeid A, Eriksson C, Fagerberg L, Falk R, Fall J, Forsberg M, Bj÷rklund MG, Gumbel K, Halimi A, Hallin I, Hamsten C, Hansson M, Hedhammar M, Hercules G, Kampf C, Larsson K, Lindskog M, Lodewyckx W, Lund J, Lundeberg J, Magnusson K, Malm E, Nilsson P, Odling J, Oksvold P, Olsson I, Oster E, Ottosson J, Paavilainen L, Persson A, Rimini R, Rockberg J, Runeson M, Sivertsson A, Sk÷llermo A, Steen J, Stenvall M, Sterky F, Str÷mberg S, Sundberg M, Tegel H, Tourle S, Wahlund E, WaldÚn A, Wan J, WernÚrus H, Westberg J, Wester K, Wrethagen U, Xu LL, Hober S, PontÚn F.
A human protein atlas for normal and cancer tissues based on antibody proteomics.
Mol Cell Proteomics. 2005 4(12):1920-32.
PubMed: 16127175 DOI: 10.1074/mcp.M500279-MCP200


PontÚn F, Jirstr÷m K, Uhlen M.
The Human Protein Atlas - a tool for pathology.
J Pathol. 2008 216(4):387-93.
PubMed: 18853439 DOI: 10.1002/path.2440


302 UhlÚn M, Fagerberg L, Hallstr÷m BM, Lindskog C, Oksvold P, Mardinoglu A, Sivertsson ┼, Kampf C, Sj÷stedt E, Asplund A, Olsson I, Edlund K, Lundberg E, Navani S, Szigyarto CA, Odeberg J, Djureinovic D, Takanen JO, Hober S, Alm T, Edqvist PH, Berling H, Tegel H, Mulder J, Rockberg J, Nilsson P, Schwenk JM, Hamsten M, von Feilitzen K, Forsberg M, Persson L, Johansson F, Zwahlen M, von Heijne G, Nielsen J, PontÚn F
Tissue-based map of the human proteome
Science 2015
DOI: 10.1126/science.1260419
301 Hu FJ, Uhlen M, Rockberg J.
Generation of HER2 monoclonal antibodies using epitopes of a rabbit polyclonal antibody.
N Biotechnol. 2014 31(1):35-43.
PubMed: 24120493 DOI: 10.1016/j.nbt.2013.10.002
300 Berntsson J, Lundgren S, Nodin B, UhlÚn M, Gaber A, Jirstr÷m K.
Expression and prognostic significance of the polymeric immunoglobulin receptor in epithelial ovarian cancer.
J Ovarian Res. 2014 7(1):26.
PubMed: 24568264 DOI: 10.1186/1757-2215-7-26
299 Alm T, von Feilitzen K, Lundberg E, Sivertsson ┼, UhlÚn M.
A chromosome-centric analysis of antibodies directed toward the human proteome using Antibodypedia.
J Proteome Res. 2014 13(3):1669-76.
PubMed: 24533432 DOI: 10.1021/pr4011525
298 Zhang MD, Tortoriello G, Hsueh B, Tomer R, Ye L, Mitsios N, Borgius L, Grant G, Kiehn O, Watanabe M, UhlÚn M, Mulder J, Deisseroth K, Harkany T, H÷kfelt TG.
Neuronal calcium-binding proteins 1/2 localize to dorsal root ganglia and excitatory spinal neurons and are regulated by nerve injury.
Proc Natl Acad Sci U S A. 2014 111(12):E1149-58.
PubMed: 24616509 DOI: 10.1073/pnas.1402318111
297 Stadler C, Fagerberg L, Sivertsson ┼, Oksvold P, Zwahlen M, Hallstr÷m BM, Lundberg E, UhlÚn M.
RNA- and antibody-based profiling of the human proteome with focus on chromosome 19.
J Proteome Res. 2014 13(4):2019-27.
PubMed: 24579871 DOI: 10.1021/pr401156g
296 Bengtsson E, Nerjovaj P, Wangefjord S, Nodin B, Eberhard J, UhlÚn M, Borgquist S, Jirstr÷m K.
HMG-CoA reductase expression in primary colorectal cancer correlates with favourable clinicopathological characteristics and an improved clinical outcome.
Diagn Pathol. 2014 9():78.
PubMed: 24708688 DOI: 10.1186/1746-1596-9-78
295 Fristedt R, Gaber A, Hedner C, Nodin B, UhlÚn M, Eberhard J, Jirstr÷m K.
Expression and prognostic significance of the polymeric immunoglobulin receptor in esophageal and gastric adenocarcinoma.
J Transl Med. 2014 12():83.
PubMed: 24694107 DOI: 10.1186/1479-5876-12-83
294 Andersson G, Wennersten C, Gaber A, Boman K, Nodin B, UhlÚn M, Segersten U, Malmstr÷m PU, Jirstr÷m K.
Reduced expression of ezrin in urothelial bladder cancer signifies more advanced tumours and an impaired survival: validatory study of two independent patient cohorts.
BMC Urol. 2014 14():36.
PubMed: 24885195 DOI: 10.1186/1471-2490-14-36
293 Liu Z, Liu L, Ísterlund T, Hou J, Huang M, Fagerberg L, Petranovic D, UhlÚn M, Nielsen J.
Improved production of a heterologous amylase in Saccharomyces cerevisiae by inverse metabolic engineering.
Appl Environ Microbiol. 2014 80(17):5542-50.
PubMed: 24973076 DOI: 10.1128/AEM.00712-14
292 Jonsson L, Hedner C, Gaber A, Korkocic D, Nodin B, UhlÚn M, Eberhard J, Jirstr÷m K.
High expression of RNA-binding motif protein 3 in esophageal and gastric adenocarcinoma correlates with intestinal metaplasia-associated tumours and independently predicts a reduced risk of recurrence and death.
Biomark Res. 2014 2():11.
PubMed: 24963396 DOI: 10.1186/2050-7771-2-11
291 Bystr÷m S, Ayoglu B, Hńggmark A, Mitsios N, Hong MG, Drobin K, Forsstr÷m B, Fredolini C, Khademi M, Amor S, UhlÚn M, Olsson T, Mulder J, Nilsson P, Schwenk JM.
Affinity Proteomic Profiling of Plasma, Cerebrospinal Fluid, and Brain Tissue within Multiple Sclerosis.
J Proteome Res. 2014 Epub ahead of print
PubMed: 25231264 DOI: 10.1021/pr500609e
290 Kampf C, Mardinoglu A, Fagerberg L, Hallstr÷m BM, Danielsson A, Nielsen J, PontÚn F, Uhlen M.
Defining the human gallbladder proteome by transcriptomics and affinity proteomics.
Proteomics. 2014 Epub ahead of print
PubMed: 25175928 DOI: 10.1002/pmic.201400201
289 Mardinoglu A, Kampf C, Asplund A, Fagerberg L, Hallstr÷m BM, Edlund K, BlŘher M, PontÚn F, Uhlen M, Nielsen J.
Defining the Human Adipose Tissue Proteome To Reveal Metabolic Alterations in Obesity.
J Proteome Res. 2014 Epub ahead of print
PubMed: 25219818 DOI: 10.1021/pr500586e
288 Libard S, Popova SN, Amini RM, Kńrjń V, Pietilńinen T, Hńmńlńinen KM, Sundstr÷m C, Hesselager G, Bergqvist M, Ekman S, Zetterling M, Smits A, Nilsson P, Pfeifer S, de Stňhl TD, Enblad G, Ponten F, Alafuzoff I.
Human Cytomegalovirus Tegument Protein pp65 Is Detected in All Intra- and Extra-Axial Brain Tumours Independent of the Tumour Type or Grade.
PLoS One. 2014 9(9):e108861.
PubMed: 25268364 DOI: 10.1371/journal.pone.0108861
287 Gardberg M, Heuser VD, Iljin K, Kampf C, Uhlen M, CarpÚn O.
Characterization of Leukocyte Formin FMNL1 Expression in Human Tissues.
J Histochem Cytochem. 2014 62(6):460-470.
PubMed: 24700756 DOI: 10.1369/0022155414532293
286 Sooman L, Freyhult E, Jaiswal A, Navani S, Edqvist PH, PontÚn F, Tchougounova E, Smits A, Elsir T, Gullbo J, Lennartsson J, Bergqvist M, Ekman S.
FGF2 as a potential prognostic biomarker for proneural glioma patients.
Acta Oncol. 2014 ():1-10.
PubMed: 25263081 DOI: 10.3109/0284186X.2014.951492
285 Lindskog C, Fagerberg L, Hallstr÷m B, Edlund K, Hellwig B, RahnenfŘhrer J, Kampf C, UhlÚn M, PontÚn F, Micke P.
The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling.
FASEB J. 2014 Epub ahead of print
PubMed: 25169055 DOI: 10.1096/fj.14-254862
284 Gremel G, Liew M, Hamzei F, Hardell E, Selling J, Ghaderi M, Stemme S, PontÚn F, Carlson JW.
A prognosis based classification of undifferentiated uterine sarcomas: Identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival.
Int J Cancer. 2014 Epub ahead of print
PubMed: 25130488 DOI: 10.1002/ijc.29141
283 Hemdan T, LindÚn M, B Lind S, V Namuduri A, Sj÷stedt E, D de Stňhl T, Asplund A, Malmstr÷m PU, Segersten U.
The prognostic value and therapeutic target role of stathmin-1 in urinary bladder cancer.
Br J Cancer. 2014 111(6):1180-7.
PubMed: 25072257 DOI: 10.1038/bjc.2014.427
282 O Leary PC, Terrile M, Bajor M, Gaj P, Hennessy BT, Mills GB, Zagozdzon A, O Connor DP, Brennan DJ, Connor K, Li J, Gonzalez-Angulo AM, Sun HD, Pu JX, PontÚn F, UhlÚn M, Jirstr÷m K, Nowis DA, Crown JP, Zagozdzon R, Gallagher WM.
Peroxiredoxin-1 protects estrogen receptor alpha from oxidative stress-induced suppression and is a protein biomarker of favorable prognosis in breast cancer.
Breast Cancer Res. 2014 16(4):R79.
PubMed: 25011585 DOI: 10.1186/bcr3691
281 Ayoglu B, Chaouch A, LochmŘller H, Politano L, Bertini E, Spitali P, Hiller M, Niks EH, Gualandi F, PontÚn F, Bushby K, Aartsma-Rus A, Schwartz E, Le Priol Y, Straub V, UhlÚn M, Cirak S, 't Hoen PA, Muntoni F, Ferlini A, Schwenk JM, Nilsson P, Al-Khalili Szigyarto C.
Affinity proteomics within rare diseases: a BIO-NMD study for blood biomarkers of muscular dystrophies.
EMBO Mol Med. 2014 6(7):918-36.
PubMed: 24920607 DOI: 10.15252/emmm.201303724
280 Lindskog C, Kuhlwilm M, Davierwala A, Fu N, Hegde G, UhlÚn M, Navani S, Pńńbo S, PontÚn F.
Analysis of candidate genes for lineage-specific expression changes in humans and primates.
J Proteome Res. 2014 13(8):3596-606.
PubMed: 24911366 DOI: 10.1021/pr500045f
279 Gremel G, Wanders A, Cedernaes J, Fagerberg L, Hallstr÷m B, Edlund K, Sj÷stedt E, UhlÚn M, PontÚn F.
The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.
J Gastroenterol. 2014 Epub ahead of print
PubMed: 24789573 DOI: 10.1007/s00535-014-0958-7
278 O'Hurley G, Sj÷stedt E, Rahman A, Li B, Kampf C, PontÚn F, Gallagher WM, Lindskog C.
Garbage in, garbage out: a critical evaluation of strategies used for validation of immunohistochemical biomarkers.
Mol Oncol. 2014 8(4):783-98.
PubMed: 24725481 DOI: 10.1016/j.molonc.2014.03.008
277 Dragomir A, de Wit M, Johansson C, Uhlen M, PontÚn F.
The role of SATB2 as a diagnostic marker for tumors of colorectal origin: Results of a pathology-based clinical prospective study.
Am J Clin Pathol. 2014 141(5):630-8.
PubMed: 24713733 DOI: 10.1309/AJCPWW2URZ9JKQJU
276 Micke P, Mattsson JS, Edlund K, Lohr M, Jirstr÷m K, Berglund A, Botling J, Rahnenfuehrer J, Marincevic M, PontÚn F, Ekman S, Hengstler J, W÷ll S, Sahin U, TŘreci O.
Aberrantly activated claudin 6 and 18.2 as potential therapy targets in non-small-cell lung cancer.
Int J Cancer. 2014 135(9):2206-14.
PubMed: 24710653 DOI: 10.1002/ijc.28857
275 Kampf C, Mardinoglu A, Fagerberg L, Hallstr÷m BM, Edlund K, Lundberg E, PontÚn F, Nielsen J, Uhlen M.
The human liver-specific proteome defined by transcriptomics and antibody-based profiling.
FASEB J. 2014 28(7):2901-14.
PubMed: 24648543 DOI: 10.1096/fj.14-250555
274 Agren R, Mardinoglu A, Asplund A, Kampf C, Uhlen M, Nielsen J.
Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling.
Mol Syst Biol. 2014 10():721.
PubMed: 24646661
273 Liem DA, Nsair A, Setty SP, Cadeiras M, Wang D, Maclellan R, Lotz C, Lin AJ, Tabaraki J, Li H, Ge J, Odeberg J, Ponten F, Larson E, Mulder J, Lundberg E, Weiss JN, Uhlen M, Ping P, Deng MC.
Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support.
Circ Heart Fail. 2014 7(2):359-66.
PubMed: 24643888 DOI: 10.1161/CIRCHEARTFAILURE.113.000250
272 Bozoky B, Savchenko A, Guven H, Ponten F, Klein G, Szekely L.
Decreased decorin expression in the tumor microenvironment.
Cancer Med. 2014 3(3):485-91.
PubMed: 24634138 DOI: 10.1002/cam4.231
271 Djureinovic D, Fagerberg L, Hallstr÷m B, Danielsson A, Lindskog C, UhlÚn M, PontÚn F.
The human testis-specific proteome defined by transcriptomics and antibody-based profiling.
Mol Hum Reprod. 2014 20(6):476-88.
PubMed: 24598113 DOI: 10.1093/molehr/gau018
270 Howat WJ, Lewis A, Jones P, Kampf C, PontÚn F, van der Loos CM, Gray N, Womack C, Warford A.
Antibody validation of immunohistochemistry for biomarker discovery: Recommendations of a consortium of academic and pharmaceutical based histopathology researchers.
Methods. 2014 Epub ahead of print
PubMed: 24525140 DOI: 10.1016/j.ymeth.2014.01.018
269 Sooman L, Ekman S, Tsakonas G, Jaiswal A, Navani S, Edqvist PH, PontÚn F, Bergstr÷m S, Johansson M, Wu X, Blomquist E, Bergqvist M, Gullbo J, Lennartsson J.
PTPN6 expression is epigenetically regulated and influences survival and response to chemotherapy in high-grade gliomas.
Tumour Biol. 2014 35(5):4479-88.
PubMed: 24510345 DOI: 10.1007/s13277-013-1590-5
268 Nilsson R, Jain M, Madhusudhan N, Sheppard NG, Strittmatter L, Kampf C, Huang J, Asplund A, Mootha VK.
Metabolic enzyme expression highlights a key role for MTHFD2 and the mitochondrial folate pathway in cancer.
Nat Commun. 2014 5():3128.
PubMed: 24451681 DOI: 10.1038/ncomms4128
267 Hansson J, Hultenby K, Cramnert C, PontÚn F, Jansson H, Lindgren D, Axelson H, Johansson ME.
Evidence for a morphologically distinct and functionally robust cell type in the proximal tubules of human kidney.
Hum Pathol. 2014 45(2):382-93.
PubMed: 24439225 DOI: 10.1016/j.humpath.2013.10.003
266 Mardinoglu A, Agren R, Kampf C, Asplund A, Uhlen M, Nielsen J.
Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease.
Nat Commun. 2014 5():3083.
PubMed: 24419221 DOI: 10.1038/ncomms4083
265 de Wit M, Kant H, Piersma SR, Pham TV, Mongera S, van Berkel MP, Boven E, PontÚn F, Meijer GA, Jimenez CR, Fijneman RJ.
Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling.
J Proteomics. 2014 99():26-39.
PubMed: 24418523 DOI: 10.1016/j.jprot.2014.01.001
264 Hansson SF, Korsgren S, PontÚn F, Korsgren O.
Detection of enterovirus in the islet cells of patients with type 1 diabetes: what do we learn from immunohistochemistry?
Diabetologia. 2014 57(3):645-6.
PubMed: 24352376 DOI: 10.1007/s00125-013-3138-z
263 Gremel G, Bergman J, Djureinovic D, Edqvist PH, Maindad V, Bharambe BM, Khan WA, Navani S, Elebro J, Jirstr÷m K, Hellberg D, UhlÚn M, Micke P, PontÚn F.
A systematic analysis of commonly used antibodies in cancer diagnostics.
Histopathology. 2014 64(2):293-305.
PubMed: 24330150 DOI: 10.1111/his.12255
262 Fagerberg L, Hallstr÷m BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, Habuka M, Tahmasebpoor S, Danielsson A, Edlund K, Asplund A, Sj÷stedt E, Lundberg E, Szigyarto CA, Skogs M, Takanen JO, Berling H, Tegel H, Mulder J, Nilsson P, Schwenk JM, Lindskog C, Danielsson F, Mardinoglu A, Sivertsson A, von Feilitzen K, Forsberg M, Zwahlen M, Olsson I, Navani S, Huss M, Nielsen J, Ponten F, UhlÚn M.
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics.
Mol Cell Proteomics. 2014 13(2):397-406.
PubMed: 24309898 DOI: 10.1074/mcp.M113.035600
261 Sherwood V, Chaurasiya SK, Ekstr÷m EJ, Guilmain W, Liu Q, Koeck T, Brown K, Hansson K, Agnarsdˇttir M, Bergqvist M, Jirstr÷m K, Ponten F, James P, Andersson T.
WNT5A-mediated β-catenin-independent signalling is a novel regulator of cancer cell metabolism.
Carcinogenesis. 2014 35(4):784-94.
PubMed: 24293407 DOI: 10.1093/carcin/bgt390
260 Fei C, Atterby C, Edqvist PH, PontÚn F, Zhang WW, Larsson E, Ryan FP.
Detection of the human endogenous retrovirus ERV3-encoded Env-protein in human tissues using antibody-based proteomics.
J R Soc Med. 2014 107(1):22-9.
PubMed: 24262892 DOI: 10.1177/0141076813509981
259 Popova SN, Bergqvist M, Dimberg A, Edqvist PH, Ekman S, Hesselager G, Ponten F, Smits A, Sooman L, Alafuzoff I.
Subtyping of gliomas of various WHO grades by the application of immunohistochemistry.
Histopathology. 2014 64(3):365-79.
PubMed: 24410805 DOI: 10.1111/his.12252
258 Edfors F, Bostr÷m T, Forsstr÷m B, Zeiler M, Johansson H, Lundberg E, Hober S, Lehti÷ J, Mann M, Uhlen M.
Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins.
Mol Cell Proteomics. 2014 13(6):1611-24.
PubMed: 24722731 DOI: 10.1074/mcp.M113.034140
257 Bostr÷m T, Johansson HJ, Lehti÷ J, UhlÚn M, Hober S.
Investigating the Applicability of Antibodies Generated within the Human Protein Atlas as Capture Agents in Immunoenrichment Coupled to Mass Spectrometry.
J Proteome Res. 2014 Epub ahead of print
PubMed: 25231543 DOI: 10.1021/pr500691a
256 Algenńs C, Agaton C, Fagerberg L, Asplund A, Bj÷rling L, Bj÷rling E, Kampf C, Lundberg E, Nilsson P, Persson A, Wester K, PontÚn F, WernÚrus H, UhlÚn M, Ottosson Takanen J, Hober S.
Antibody performance in western blot applications is context-dependent.
Biotechnol J. 2014 9(3):435-45.
PubMed: 24403002 DOI: 10.1002/biot.201300341
255 Forsstr÷m B, Bisławska Axnas B, Stengele KP, BŘhler J, Albert TJ, Richmond TA, Jingxin Hu F, Nilsson P, Hudson EP, Rockberg J, Uhlen M.
Proteome-wide epitope mapping of antibodies using ultra-dense peptide arrays.
Mol Cell Proteomics. 2014 Epub ahead of print
PubMed: 24705123 DOI: 10.1074/mcp.M113.033308
254 Bachmann J, BurtÚ F, Pramana S, Conte I, Brown BJ, Orimadegun AE, Ajetunmobi WA, Afolabi NK, Akinkunmi F, Omokhodion S, Akinbami FO, Shokunbi WA, Kampf C, Pawitan Y, UhlÚn M, Sodeinde O, Schwenk JM, Wahlgren M, Fernandez-Reyes D, Nilsson P.
Affinity proteomics reveals elevated muscle proteins in plasma of children with cerebral malaria.
PLoS Pathog. 2014 10(4):e1004038.
PubMed: 24743550 DOI: 10.1371/journal.ppat.1004038
253 Boman K, Larsson AH, Segersten U, Kuteeva E, Johannesson H, Nodin B, Eberhard J, UhlÚn M, Malmstr÷m PU, Jirstr÷m K.
Membranous expression of podocalyxin-like protein is an independent factor of poor prognosis in urothelial bladder cancer.
Br J Cancer. 2013 108(11):2321-8.
PubMed: 23652315 DOI: 10.1038/bjc.2013.215
252 Larsson AH, Nodin B, Syk I, Palmquist I, UhlÚn M, Eberhard J, Jirstr÷m K.
Podocalyxin-like protein expression in primary colorectal cancer and synchronous lymph node metastases.
Diagn Pathol. 2013 8():109.
PubMed: 23819542 DOI: 10.1186/1746-1596-8-109
251 Sernbo S, Borrebaeck CA, UhlÚn M, Jirstr÷m K, Ek S.
Nuclear T-STAR protein expression correlates with HER2 status, hormone receptor negativity and prolonged recurrence free survival in primary breast cancer and decreased cancer cell growth in vitro.
PLoS One. 2013 8(7):e70596.
PubMed: 23923007 DOI: 10.1371/journal.pone.0070596
250 Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, Deng N, Kim AK, Choi JH, Zelaya I, Liem D, Meyer D, Odeberg J, Fang C, Lu HJ, Xu T, Weiss J, Duan H, Uhlen M, Yates JR, Apweiler R, Ge J, Hermjakob H, Ping P.
Integration of cardiac proteome biology and medicine by a specialized knowledgebase.
Circ Res. 2013 113(9):1043-53.
PubMed: 23965338 DOI: 10.1161/CIRCRESAHA.113.301151
249 Gremel G, Grannas K, Sutton LA, PontÚn F, Zieba A.
In situ Protein Detection for Companion Diagnostics.
Front Oncol. 2013 3():271.
PubMed: 24199171 DOI: 10.3389/fonc.2013.00271
248 Jansson L, Kampf C, Kńllskog O.
Functional stimulation of graft nerves has minor effects on insulin release from transplanted rat pancreatic islets.
Ups J Med Sci. 2013 118(4):209-16.
PubMed: 23977866 DOI: 10.3109/03009734.2013.818601
247 Nilsson CL, Berven F, Selheim F, Liu H, Moskal JR, Kroes RA, Sulman EP, Conrad CA, Lang FF, AndrÚn PE, Nilsson A, Carlsohn E, Lilja H, Malm J, Feny÷ D, Subramaniyam D, Wang X, Gonzales-Gonzales M, Dasilva N, Diez P, Fuentes M, VÚgvßri ┴, Sj÷din K, Welinder C, Laurell T, Fehniger TE, Lindberg H, Rezeli M, Edula G, Hober S, Marko-Varga G.
Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.
J Proteome Res. 2013 12(1):135-50.
PubMed: 23249167 DOI: 10.1021/pr3008607
246 Malm J, Fehniger TE, Danmyr P, VÚgvßri A, Welinder C, Lindberg H, Appelqvist R, Sj÷din K, Wieslander E, Laurell T, Hober S, Berven FS, Feny÷ D, Wang X, AndrÚn PE, Edula G, Carlsohn E, Fuentes M, Nilsson CL, Dahlbńck M, Rezeli M, Erlinge D, Marko-Varga G.
Developments in biobanking workflow standardization providing sample integrity and stability.
J Proteomics. 2013 95():38-45.
PubMed: 23856607 DOI: 10.1016/j.jprot.2013.06.035
245 Hńggmark A, Bystr÷m S, Ayoglu B, Qundos U, UhlÚn M, Khademi M, Olsson T, Schwenk JM, Nilsson P.
Antibody-based profiling of cerebrospinal fluid within multiple sclerosis.
Proteomics. 2013 13(15):2256-67.
PubMed: 23696371 DOI: 10.1002/pmic.201200580
244 Ayoglu B, Hńggmark A, Khademi M, Olsson T, UhlÚn M, Schwenk JM, Nilsson P.
Autoantibody profiling in multiple sclerosis using arrays of human protein fragments.
Mol Cell Proteomics. 2013 12(9):2657-72.
PubMed: 23732997 DOI: 10.1074/mcp.M112.026757
243 Drobin K, Nilsson P, Schwenk JM.
Highly multiplexed antibody suspension bead arrays for plasma protein profiling.
Methods Mol Biol. 2013 1023():137-45.
PubMed: 23765623 DOI: 10.1007/978-1-4614-7209-4_8
242 Kremer AN, van der Griendt JC, van der Meijden ED, Honders MW, Ayoglu B, Schwenk JM, Nilsson P, Falkenburg JH, Griffioen M.
Development of a coordinated allo T-cell and auto B-cell response against autosomal PTK2B after allogeneic hematopoietic stem cell transplantation.
Haematologica. 2013 Epub ahead of print
PubMed: 24097630 DOI: 10.3324/haematol.2013.086652
241 Qundos U, Hong MG, Tybring G, Divers M, Odeberg J, Uhlen M, Nilsson P, Schwenk JM.
Profiling post-centrifugation delay of serum and plasma with antibody bead arrays.
J Proteomics. 2013 Epub ahead of print
PubMed: 23631827 DOI: 10.1016/j.jprot.2013.04.020
240 Neiman M, Fredolini C, Johansson H, Lehti÷ J, Nygren PA, UhlÚn M, Nilsson P, Schwenk JM.
Selectivity analysis of single binder assays used in plasma protein profiling.
Proteomics. 2013 Epub ahead of print
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239 Swamidoss IN, Kňrsnńs A, Uhlmann V, Ponnusamy P, Kampf C, Simonsson M, Wńhlby C, Strand R.
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235 Perisic L, Hedin E, Razuvaev A, Lengquist M, Osterholm C, Folkersen L, Gillgren P, Paulsson-Berne G, Ponten F, Odeberg J, Hedin U.
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234 O'Hurley G, Daly E, O'Grady A, Cummins R, Quinn C, Flanagan L, Pierce A, Fan Y, Lynn MA, Rafferty M, Fitzgerald D, PontÚn F, Duffy MJ, Jirstr÷m K, Kay EW, Gallagher WM.
Investigation of Molecular Alterations of AKT-3 in Triple Negative Breast Cancer.
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233 O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ, McCann AH, PontÚn F, UhlÚn M, Zagozdzon R, Duffy MJ, Kell MR, Jirstr÷m K, Gallagher WM.
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229 Li A, Estigoy C, Raftery M, Cameron D, Odeberg J, PontÚn F, Lal S, Dos Remedios CG.
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227 Giandomenico V, Modlin IM, PontÚn F, Nilsson M, Landegren U, Bergqvist J, Khan MS, Millar RP, Lňngstr÷m B, Borlak J, Eriksson B, Nielsen B, Baltzer L, Waterton JC, Ahlstr÷m H, Íberg K.
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226 Geiger T, Velic A, Macek B, Lundberg E, Kampf C, Nagaraj N, Uhlen M, Cox J, Mann M.
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225 Gedda L, Bj÷rkelund H, Lebel L, Asplund A, Dubois L, Wester K, Penagos N, Malmqvist M, Andersson K.
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224 Gardberg M, Kaipio K, Lehtinen L, Mikkonen P, Heuser VD, Talvinen K, Iljin K, Kampf C, Uhlen M, GrÚnman R, Koivisto M, CarpÚn O.
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A study of embryonic stem cell-related proteins in human astrocytomas: Identification of Nanog as a predictor of survival.
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Sox5 can suppress platelet-derived growth factor B-induced glioma development in Ink4a-deficient mice through induction of acute cellular senescence.
Oncogene. 2009 28(12):1537-48.
PubMed: 19219070 DOI: 10.1038/onc.2009.9
91 Oberg F, Haseeb A, Ahnfelt M, PontÚn F, Westermark B, El-Obeid A.
Herbal melanin activates TLR4/NF-kappaB signaling pathway.
Phytomedicine. 2009 16(5):477-84.
PubMed: 19103478 DOI: 10.1016/j.phymed.2008.10.008
90 Apweiler R, Aslanidis C, Deufel T, Gerstner A, Hansen J, Hochstrasser D, Kellner R, Kubicek M, Lottspeich F, Maser E, Mewes HW, Meyer HE, MŘllner S, Mutter W, Neumaier M, Nollau P, Nothwang HG, Ponten F, Radbruch A, Reinert K, Rothe G, Stockinger H, Tßrnok A, Taussig MJ, Thiel A, Thiery J, Ueffing M, Valet G, Vandekerckhove J, Wagener C, Wagner O, Schmitz G.
Approaching clinical proteomics: current state and future fields of application in cellular proteomics.
Cytometry A. 2009 75(10):816-32.
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89 Leja J, Essaghir A, Essand M, Wester K, Oberg K, T÷tterman TH, Lloyd R, Vasmatzis G, Demoulin JB, Giandomenico V.
Novel markers for enterochromaffin cells and gastrointestinal neuroendocrine carcinomas.
Mod Pathol. 2009 22(2):261-72.
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88 Qu M, Aronica E, Boer K, Fńllmar D, Kumlien E, NistÚr M, Wester K, PontÚn F, Smits A.
DLG3/SAP102 protein expression in malformations of cortical development: a study of human epileptic cortex by tissue microarray.
Epilepsy Res. 2009 84(1):33-41.
PubMed: 19167192 DOI: 10.1016/j.eplepsyres.2008.12.004
87 Newberg JY, Li J, Rao A, PontÚn F, UhlÚn M, Lundberg E, Murphy RF.
Automated Analysis of Human Protein Atlas Immunofluorescence Images.
Proc IEEE Int Symp Biomed Imaging. 2009 5193229:1023-1026.
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86 Gaber A, Johansson M, Stenman UH, Hotakainen K, PontÚn F, Glimelius B, Bjartell A, Jirstr÷m K, Birgisson H.
High expression of tumour-associated trypsin inhibitor correlates with liver metastasis and poor prognosis in colorectal cancer.
Br J Cancer. 2009 100(10):1540-8.
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85 Paulsson J, Sj÷blom T, Micke P, PontÚn F, Landberg G, Heldin CH, Bergh J, Brennan DJ, Jirstr÷m K, Ostman A.
Prognostic significance of stromal platelet-derived growth factor beta-receptor expression in human breast cancer.
Am J Pathol. 2009 175(1):334-41.
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84 Apweiler R, Aslanidis C, Deufel T, Gerstner A, Hansen J, Hochstrasser D, Kellner R, Kubicek M, Lottspeich F, Maser E, Mewes HW, Meyer HE, MŘllner S, Mutter W, Neumaier M, Nollau P, Nothwang HG, Ponten F, Radbruch A, Reinert K, Rothe G, Stockinger H, Tarnok A, Taussig MJ, Thiel A, Thiery J, Ueffing M, Valet G, Vandekerckhove J, Verhuven W, Wagener C, Wagner O, Schmitz G.
Approaching clinical proteomics: current state and future fields of application in fluid proteomics.
Clin Chem Lab Med. 2009 47(6):724-44.
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83 Ghanipour A, Jirstr÷m K, PontÚn F, Glimelius B, Pňhlman L, Birgisson H.
The prognostic significance of tryptophanyl-tRNA synthetase in colorectal cancer.
Cancer Epidemiol Biomarkers Prev. 2009 18(11):2949-56.
PubMed: 19900940 DOI: 10.1158/1055-9965.EPI-09-0456
82 Markljung E, Jiang L, Jaffe JD, Mikkelsen TS, Wallerman O, Larhammar M, Zhang X, Wang L, Saenz-Vash V, Gnirke A, Lindroth AM, BarrÚs R, Yan J, Str÷mberg S, De S, PontÚn F, Lander ES, Carr SA, Zierath JR, Kullander K, Wadelius C, Lindblad-Toh K, Andersson G, Hjńlm G, Andersson L.
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.
PLoS Biol. 2009 7(12):e1000256.
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81 Rimini R, Schwenk JM, Sundberg M, Sj÷berg R, Klevebring D, Gry M, UhlÚn M, Nilsson P.
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J Proteomics 2009 73(2):252-66.
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80 Joensson HN, Samuels ML, Brouzes ER, Medkova M, UhlÚn M, Link DR, Andersson-Svahn H.
Detection and analysis of low-abundance cell-surface biomarkers using enzymatic amplification in microfluidic droplets.
Angew Chem Int Ed Engl. 2009 48(14):2518-21.
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79 Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, Goldbeter A, Hace N, Henney A, Hood L, Iyengar R, Jackson V, Kallioniemi O, KlingmŘller U, Kolar P, Kolch W, Kyriakopoulou C, Laplace F, Lehrach H, Marcus F, Matrisian L, Nolan G, Pelkmans L, Potti A, Sander C, Seljak M, Singer D, Sorger P, Stunnenberg H, Superti-Furga G, Uhlen M, Vidal M, Weinstein J, Wigle D, Williams M, Wolkenhauer O, Zhivotovsky B, Zinovyev A, Zupan B.
Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008).
Mol Oncol. 2009 3(1):9-17.
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78 Rockberg J, Schwenk JM, UhlÚn M.
Discovery of epitopes for targeting the human epidermal growth factor receptor 2 (HER2) with antibodies.
Mol Oncol. 2009 3(3):238-47.
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77 Gry M, Rimini R, Str÷mberg S, Asplund A, PontÚn F, UhlÚn M, Nilsson P.
Correlations between RNA and protein expression profiles in 23 human cell lines.
BMC Genomics. 2009 10:365.
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76 J÷gi A, Brennan DJ, RydÚn L, Magnusson K, Fern÷ M, Stňl O, Borgquist S, Uhlen M, Landberg G, Pňhlman S, PontÚn F, Jirstr÷m K.
Nuclear expression of the RNA-binding protein RBM3 is associated with an improved clinical outcome in breast cancer.
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75 Ahlin G, Hilgendorf C, Karlsson J, Szigyarto CA, UhlÚn M, Artursson P.
Endogenous gene and protein expression of drug-transporting proteins in cell lines routinely used in drug discovery programs.
Drug Metab Dispos. 2009 37(12):2275-83.
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74 Vashisht AA, Zumbrennen KB, Huang X, Powers DN, Durazo A, Sun D, Bhaskaran N, Persson A, Uhlen M, Sangfelt O, Spruck C, Leibold EA, Wohlschlegel JA.
Control of iron homeostasis by an iron-regulated ubiquitin ligase.
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73 Mulder J, Zilberter M, Spence L, Tortoriello G, UhlÚn M, Yanagawa Y, Aujard F, H÷kfelt T, Harkany T.
Secretagogin is a Ca2+-binding protein specifying subpopulations of telencephalic neurons.
Proc Natl Acad Sci U S A. 2009 106(52):22492-7.
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72 Segersten MU, Edlund EK, Micke P, de la Torre M, Hamberg H, Edvinsson AE, Andersson SE, Malmstr÷m PU, Wester HK.
A novel strategy based on histological protein profiling in-silico for identifying potential biomarkers in urinary bladder cancer.
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71 PontÚn F, Gry M, Fagerberg L, Lundberg E, Asplund A, Berglund L, Oksvold P, Bj÷rling E, Hober S, Kampf C, Navani S, Nilsson P, Ottosson J, Persson A, WernÚrus H, Wester K, UhlÚn M.
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Mol Syst Biol. 2009 5:337.
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70 Rockberg J, UhlÚn M.
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69 Rodriguez H, Snyder M, UhlÚn M, Andrews P, Beavis R, Borchers C, Chalkley RJ, Cho SY, Cottingham K, Dunn M, Dylag T, Edgar R, Hare P, Heck AJ, Hirsch RF, Kennedy K, Kolar P, Kraus HJ, Mallick P, Nesvizhskii A, Ping P, PontÚn F, Yang L, Yates JR, Stein SE, Hermjakob H, Kinsinger CR, Apweiler R.
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68 Alimohammadi M, Dubois N, Sk÷ldberg F, Hallgren A, Tardivel I, Hedstrand H, Haavik J, Husebye ES, Gustafsson J, Rorsman F, Meloni A, Janson C, Vialettes B, Kajosaari M, Egner W, Sargur R, PontÚn F, Amoura Z, Grimfeld A, De Luca F, Betterle C, Perheentupa J, Kńmpe O, Carel JC.
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Proc Natl Acad Sci U S A. 2009 106(11):4396-401.
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67 Str÷mberg S, Agnarsdˇttir M, Magnusson K, Rexhepaj E, Bolander A, Lundberg E, Asplund A, Ryan D, Rafferty M, Gallagher WM, Uhlen M, Bergqvist M, Ponten F.
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J Proteome Res. 2009 8(4):1639-46.
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66 Estigoy CB, PontÚn F, Odeberg J, Herbert B, Guilhaus M, Charleston M, Ho JWK, Cameron D, dos Remedios CG.
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65 Wensman H, G÷ransson H, Leuchowius KJ, Str÷mberg S, PontÚn F, Isaksson A, Rutteman GR, Heldin NE, Pejler G, HellmÚn E.
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64 Mulder J, Bj÷rling E, Jonasson K, WernÚrus H, Hober S, H÷kfelt T, UhlÚn M.
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Mol Cell Proteomics. 2009 8(7):1612-22.
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63 Larsson K, Eriksson C, Schwenk JM, Berglund L, Wester K, UhlÚn M, Hober S, WernÚrus H.
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61 Tegel H, Steen J, Konrad A, Nikdin H, Pettersson K, Stenvall M, Tourle S, Wrethagen U, Xu L, Yderland L, UhlÚn M, Hober S, Ottosson J.
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60 Ramstr÷m M, Zuberovic A, Gr÷nwall C, Hanrieder J, Bergquist J, Hober S.
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59 Koomoa DL, Go RC, Wester K, Bachmann AS.
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58 Bolander A, Agnarsdˇttir M, Str÷mberg S, Ponten F, Hesselius P, Uhlen M, Bergqvist M.
The protein expression of TRP-1 and galectin-1 in cutaneous malignant melanomas.
Cancer Genomics Proteomics 2008 5(6):293-300.
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57 Borgquist S, Djerbi S, PontÚn F, Anagnostaki L, Goldman M, Gaber A, Manjer J, Landberg G, Jirstr÷m K.
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56 Borgquist S, J÷gi A, PontÚn F, RydÚn L, Brennan DJ, Jirstr÷m K.
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55 Asplund A, Gry Bj÷rklund M, Sundquist C, Str÷mberg S, Edlund K, Ostman A, Nilsson P, PontÚn F, Lundeberg J.
Expression profiling of microdissected cell populations selected from basal cells in normal epidermis and basal cell carcinoma.
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53 Uhlen M, Grńslund S, Sundstr÷m M.
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52 PontÚn F, Jirstr÷m K, Uhlen M.
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51 Rockberg J, L÷fblom J, Hjelm B, UhlÚn M, Stňhl S.
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49 Bj÷rling E, UhlÚn M.
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48 UhlÚn M, Hober S.
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47 Lundberg E, Gry M, Oksvold P, Kononen J, Andersson-Svahn H, PontÚn F, UhlÚn M, Asplund A.
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46 Schwenk JM, Gry M, Rimini R, UhlÚn M, Nilsson P.
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45 Berglund L, Bj÷rling E, Jonasson K, Rockberg J, Fagerberg L, Al-Khalili Szigyarto C, Sivertsson A, UhlÚn M.
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Evaluation of monospecific antibodies: a comparison study with commercial analogs using immunohistochemistry on tissue microarrays.
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41 Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Bj÷rling E, Asplund A, PontÚn F, Brismar H, UhlÚn M, Andersson-Svahn H.
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Mol Cell Proteomics. 2008 7(3):499-508.
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40 Bj÷rling E, Lindskog C, Oksvold P, LinnÚ J, Kampf C, Hober S, UhlÚn M, PontÚn F.
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39 Hober S, UhlÚn M.
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